Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00479.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3012
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:1341 original size:13 final size:13

Alignment explanation


    Indices: 1323--1352  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1313 TGAATGAAAA

                     *   
       1323 TTGCATTGCGGTT
          1 TTGCATTGCAGTT

                         
       1336 TTGCATTGCAGTT
          1 TTGCATTGCAGTT

                
       1349 TTGC
          1 TTGC

       1353 TTTTCAGTCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.10, C:0.17, G:0.27, T:0.47


Consensus pattern (13 bp):   
TTGCATTGCAGTT
Done.