Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00479.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9050
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:3027 original size:19 final size:19

Alignment explanation


    Indices: 3003--3046  Score: 70
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       2993 CTAGAATAAG

                               
       3003 AATAAAACTTATCTACCTA
          1 AATAAAACTTATCTACCTA

                   *  *        
       3022 AATAAAATTTGTCTACCTA
          1 AATAAAACTTATCTACCTA

                  
       3041 AATAAA
          1 AATAAA

       3047 TTTAAAATAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  19   23  1.00

ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32


Consensus pattern (19 bp):   
AATAAAACTTATCTACCTA

Found at i:5863 original size:9 final size:9

Alignment explanation


    Indices: 5849--5874  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       5839 ATGTTTTGCT

                     
       5849 AATTCACAA
          1 AATTCACAA

                     
       5858 AATTCACAA
          1 AATTCACAA

                    
       5867 AATTCACA
          1 AATTCACA

       5875 GTGATATGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23


Consensus pattern (9 bp):   
AATTCACAA
Done.