Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02162.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2347
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30


Found at i:1952 original size:14 final size:14

Alignment explanation


    Indices: 1933--1962  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1923 AGCACAACCG

                       *  
       1933 TTGGGTACAAAGTT
          1 TTGGGTACAAAATT

                          
       1947 TTGGGTACAAAATT
          1 TTGGGTACAAAATT

              
       1961 TT
          1 TT

       1963 CCGTTGTGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40


Consensus pattern (14 bp):   
TTGGGTACAAAATT
Done.