Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00497.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1836
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29


Found at i:190 original size:21 final size:21

Alignment explanation


    Indices: 166--209  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        156 TGAAAGTTAA

                                 
        166 GTCCCAGAATCTCAACACATT
          1 GTCCCAGAATCTCAACACATT

                                 
        187 GTCCCAGAATCTCAACACATT
          1 GTCCCAGAATCTCAACACATT

              
        208 GT
          1 GT

        210 GCCGCACATC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.32, C:0.32, G:0.11, T:0.25


Consensus pattern (21 bp):   
GTCCCAGAATCTCAACACATT
Done.