Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00500.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 585

Length: 975
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31


Found at i:173 original size:16 final size:16

Alignment explanation


    Indices: 149--179  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        139 CAAGATCACT

                *           
        149 TATCTGCAGTCTGTTA
          1 TATCCGCAGTCTGTTA

                           
        165 TATCCGCAGTCTGTT
          1 TATCCGCAGTCTGTT

        180 TTCCCAGCCC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42


Consensus pattern (16 bp):   
TATCCGCAGTCTGTTA
Done.