Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00510.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 915

Length: 1526
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35


Found at i:136 original size:45 final size:45

Alignment explanation


    Indices: 72--164  Score: 186
    Period size: 45  Copynumber: 2.1  Consensus size: 45

         62 TTGCTTAACA

                                                         
         72 CTTAACTTCTTTCACTTCATCCACTTCTTCCAGGTTTCCTTTTCT
          1 CTTAACTTCTTTCACTTCATCCACTTCTTCCAGGTTTCCTTTTCT

                                                         
        117 CTTAACTTCTTTCACTTCATCCACTTCTTCCAGGTTTCCTTTTCT
          1 CTTAACTTCTTTCACTTCATCCACTTCTTCCAGGTTTCCTTTTCT

               
        162 CTT
          1 CTT

        165 TCCCTTTTAT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   48  1.00

ACGTcount: A:0.13, C:0.33, G:0.04, T:0.49


Consensus pattern (45 bp):   
CTTAACTTCTTTCACTTCATCCACTTCTTCCAGGTTTCCTTTTCT
Done.