Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00525.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33


Found at i:1053 original size:28 final size:28

Alignment explanation


    Indices: 1022--1075  Score: 90
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       1012 TGAGAGCGGG

                      *        *        
       1022 TGTTCAATTTTAGTACTATGTGAAAGGT
          1 TGTTCAATTTGAGTACTATATGAAAGGT

                                      
       1050 TGTTCAATTTGAGTACTATATGAAAG
          1 TGTTCAATTTGAGTACTATATGAAAG

       1076 ATTTTATTAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   24  1.00

ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41


Consensus pattern (28 bp):   
TGTTCAATTTGAGTACTATATGAAAGGT
Done.