Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00533.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 918

Length: 1531
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1030 original size:32 final size:32

Alignment explanation


    Indices: 994--1054  Score: 113
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        984 AATAAAATAA

                          *                 
        994 TAAATTTACTTTTTTATTTAATATAAATCAAC
          1 TAAATTTACTTTTTAATTTAATATAAATCAAC

                                         
       1026 TAAATTTACTTTTTAATTTAATATAAATC
          1 TAAATTTACTTTTTAATTTAATATAAATC

       1055 TATTACCTAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   28  1.00

ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51


Consensus pattern (32 bp):   
TAAATTTACTTTTTAATTTAATATAAATCAAC
Done.