Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00541.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4074
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36


Found at i:1979 original size:22 final size:22

Alignment explanation


    Indices: 1951--1995  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1941 TTCAAATGAC

                                  
       1951 TATTTTAATGTATTGCTAAGCA
          1 TATTTTAATGTATTGCTAAGCA

                                  
       1973 TATTTTAATGTATTGCTAAGCA
          1 TATTTTAATGTATTGCTAAGCA

             
       1995 T
          1 T

       1996 TTATACCACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47


Consensus pattern (22 bp):   
TATTTTAATGTATTGCTAAGCA
Done.