Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00549.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2971
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:1830 original size:121 final size:121

Alignment explanation


    Indices: 1661--1899  Score: 433
    Period size: 121  Copynumber: 2.0  Consensus size: 121

       1651 TGTCTCTGTC

                                                       *                     
       1661 TCTCTCTCTCTTTTGATACGTGGCATTGCTAGGATCAAAACCTTAACATTGGAACAAAGAGTCTG
          1 TCTCTCTCTCTTTTGATACGTGGCATTGCTAGGATCAAAACCTGAACATTGGAACAAAGAGTCTG

                        *    *                            *         
       1726 TCCTCTACCAACTACACTGTTGTTGGCTAAAACAATCAGTAAACTTTTCATCTCTG
         66 TCCTCTACCAACAACACCGTTGTTGGCTAAAACAATCAGTAAACTTCTCATCTCTG

                                                                             
       1782 TCTCTCTCTCTTTTGATACGTGGCATTGCTAGGATCAAAACCTGAACATTGGAACAAAGAGTCTG
          1 TCTCTCTCTCTTTTGATACGTGGCATTGCTAGGATCAAAACCTGAACATTGGAACAAAGAGTCTG

                                      *                          
       1847 TCCTCTACCAACAACACCGTTGTTGGTTAAAACAATCAGTAAACTTCTCATCT
         66 TCCTCTACCAACAACACCGTTGTTGGCTAAAACAATCAGTAAACTTCTCATCT

       1900 TACTTCGACT


Statistics
Matches: 113,  Mismatches: 5, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 121  113  1.00

ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32


Consensus pattern (121 bp):   
TCTCTCTCTCTTTTGATACGTGGCATTGCTAGGATCAAAACCTGAACATTGGAACAAAGAGTCTG
TCCTCTACCAACAACACCGTTGTTGGCTAAAACAATCAGTAAACTTCTCATCTCTG
Done.