Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00557.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3968
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:3460 original size:3 final size:3

Alignment explanation


    Indices: 3454--3480  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       3444 TTTTTTTTTT

                                               
       3454 TTG TTG TTG TTG TTG TTG TTG TTG TTG
          1 TTG TTG TTG TTG TTG TTG TTG TTG TTG

       3481 ATATTTTGGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67


Consensus pattern (3 bp):   
TTG

Done.