Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00562.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1022
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32


Found at i:766 original size:31 final size:30

Alignment explanation


    Indices: 709--766  Score: 80
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        699 TAGGATTGAT

                 *       *    *           
        709 GGGTTTTGTTTGTTATGTTAATTTTTTTTA
          1 GGGTTCTGTTTGTGATGTAAATTTTTTTTA

                                        
        739 GGGTTCTGTTTGTGATGCTAAATTTTTT
          1 GGGTTCTGTTTGTGATG-TAAATTTTTT

        767 AATGAATTGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  30   15  0.62
  31    9  0.38

ACGTcount: A:0.14, C:0.03, G:0.22, T:0.60


Consensus pattern (30 bp):   
GGGTTCTGTTTGTGATGTAAATTTTTTTTA
Done.