Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00566.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1351
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32


Found at i:503 original size:26 final size:26

Alignment explanation


    Indices: 474--526  Score: 72
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        464 TTTACAGTTT

                                       
        474 TACCCCTAGGAGATAAATT-ACCGAAA
          1 TACCCCTAGG-GATAAATTGACCGAAA

                       *          *   
        500 TACCCCTAGGGTTAAATTGACCTAAA
          1 TACCCCTAGGGATAAATTGACCGAAA

             
        526 T
          1 T

        527 GCATGTTTGA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  25    7  0.29
  26   17  0.71

ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25


Consensus pattern (26 bp):   
TACCCCTAGGGATAAATTGACCGAAA

Found at i:1019 original size:137 final size:136

Alignment explanation


    Indices: 774--1059  Score: 518
    Period size: 137  Copynumber: 2.1  Consensus size: 136

        764 GAGTAGTCTC

                                   *                                         
        774 CCCAAATGGGCTTGCATATTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
        839 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
        904 CTGTTA
        131 CTGTTA

                                                                             
        910 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATAT-TTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                *                    *                                       
        975 TGTTGTCTGAATAAGGGGCTAAGGCTCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1040 ACTGTTA
        130 ACTGTTA

              **         
       1047 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1060 AGGCCCAATG


Statistics
Matches: 144,  Mismatches: 5, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
 136   19  0.13
 137  125  0.87

ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Done.