Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00595.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2962
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35


Found at i:1028 original size:29 final size:29

Alignment explanation


    Indices: 970--1028  Score: 73
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        960 TGAAGATATA

                                    **   
        970 TGGAACCTGTTGAAAGGAGCTCCTGCCCT
          1 TGGAACCTGTTGAAAGGAGCTCCTAACCT

                  *       *       *      
        999 TGGAACTTGTTGAAGGGAGCTCTTAACCT
          1 TGGAACCTGTTGAAAGGAGCTCCTAACCT

             
       1028 T
          1 T

       1029 AAACTCATTG


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  29   25  1.00

ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29


Consensus pattern (29 bp):   
TGGAACCTGTTGAAAGGAGCTCCTAACCT

Found at i:1170 original size:15 final size:15

Alignment explanation


    Indices: 1146--1175  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1136 TAAGAATGAG

                 *         
       1146 AACTATAATTAAGGA
          1 AACTAAAATTAAGGA

                           
       1161 AACTAAAATTAAGGA
          1 AACTAAAATTAAGGA

       1176 CTTCTAATTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23


Consensus pattern (15 bp):   
AACTAAAATTAAGGA
Done.