Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00600.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41


Found at i:477 original size:52 final size:51

Alignment explanation


    Indices: 401--511  Score: 168
    Period size: 52  Copynumber: 2.1  Consensus size: 51

        391 AGTGTAATTG

                       *      *             *                   
        401 TTTTTCATGAGTAGATCTTGTGTTCGAATGTGTGACCATACCTTTTTTTCTT
          1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACC-TTTTTTCTT

                                                    *          
        453 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATATCTTTTTTCTT
          1 TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT

                    
        504 TCTTTTCA
          1 T-TTTTCA

        512 AATATGTTAA


Statistics
Matches: 54,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  51   10  0.19
  52   44  0.81

ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49


Consensus pattern (51 bp):   
TTTTTCATGAGCAGATCTCGTGTTCGAATGTGCGACCATACCTTTTTTCTT

Found at i:933 original size:23 final size:23

Alignment explanation


    Indices: 906--951  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        896 AGCATCTCGA

                   *    *          
        906 ACTTTTATTTTATTTTAAAAATT
          1 ACTTTTACTTTAATTTAAAAATT

                              *    
        929 ACTTTTACTTTAATTTAATAATT
          1 ACTTTTACTTTAATTTAAAAATT

        952 TCTATTTGGG


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59


Consensus pattern (23 bp):   
ACTTTTACTTTAATTTAAAAATT
Done.