Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00600.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 396

Length: 661
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38


Found at i:582 original size:23 final size:23

Alignment explanation


    Indices: 555--600  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        545 AGCATCTCGA

                   *    *          
        555 ACTTTTATTTTATTTTAAAAATT
          1 ACTTTTACTTTAATTTAAAAATT

                              *    
        578 ACTTTTACTTTAATTTAATAATT
          1 ACTTTTACTTTAATTTAAAAATT

        601 TCTATTTGGG


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59


Consensus pattern (23 bp):   
ACTTTTACTTTAATTTAAAAATT
Done.