Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00602.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4328
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33


Found at i:684 original size:18 final size:18

Alignment explanation


    Indices: 659--698  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        649 TTAACTTAAT

                              
        659 TTTA-ATTAGTAGTTCTA
          1 TTTACATTAGTAGTTCTA

                     *  *     
        676 TTTACATTATTATTTCTA
          1 TTTACATTAGTAGTTCTA

                 
        694 TTTAC
          1 TTTAC

        699 CCATTTATTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  17    4  0.20
  18   16  0.80

ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57


Consensus pattern (18 bp):   
TTTACATTAGTAGTTCTA
Done.