Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00627.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3282
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34


Found at i:63 original size:19 final size:21

Alignment explanation


    Indices: 39--78  Score: 57
    Period size: 19  Copynumber: 2.0  Consensus size: 21

         29 AAGAAACGGC

                                 
         39 TCTCATGCT-AA-TCTCTCAA
          1 TCTCATGCTCAATTCTCTCAA

                   *             
         58 TCTCATGTTCAATTCTCTCAA
          1 TCTCATGCTCAATTCTCTCAA

         79 ACCAAAATCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    8  0.44
  20    2  0.11
  21    8  0.44

ACGTcount: A:0.25, C:0.30, G:0.05, T:0.40


Consensus pattern (21 bp):   
TCTCATGCTCAATTCTCTCAA
Done.