Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00633.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:981 original size:9 final size:9

Alignment explanation


    Indices: 953--985  Score: 50
    Period size: 9  Copynumber: 3.8  Consensus size: 9

        943 ATGGGAAATG

                     
        953 AAAAGAAGA
          1 AAAAGAAGA

                   * 
        962 AAAA-AAAA
          1 AAAAGAAGA

                     
        970 AAAAGAAGA
          1 AAAAGAAGA

                   
        979 AAAAGAA
          1 AAAAGAA

        986 CTGTTTGGTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
   8    7  0.33
   9   14  0.67

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (9 bp):   
AAAAGAAGA
Done.