Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00635.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 698

Length: 1164
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33


Found at i:229 original size:44 final size:44

Alignment explanation


    Indices: 158--288  Score: 174
    Period size: 44  Copynumber: 3.0  Consensus size: 44

        148 GCGCTTTCAT

                       *       *          *   *          
        158 ATGATGCCATATCATCTTTTAGA-TATGGTATTATTCATTTTATC
          1 ATGATGCCATAGCATCTTTCA-ACTATGGTCTTACTCATTTTATC

                 *                                      
        202 ATGATTCCATAGCATCTTTCAACTATGGTCTTACTCATTTTATC
          1 ATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTATC

                *  *             *                     
        246 ATGACGCTATAGCATCTTTCAGCTATGGTCTTACTCATTTTAT
          1 ATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTAT

        289 GCATATAGCC


Statistics
Matches: 77,  Mismatches: 9, Indels: 2
        0.88            0.10        0.02

Matches are distributed among these distances:
  43    1  0.01
  44   76  0.99

ACGTcount: A:0.25, C:0.19, G:0.11, T:0.44


Consensus pattern (44 bp):   
ATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTATC
Done.