Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00636.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8149
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31


Found at i:2188 original size:22 final size:22

Alignment explanation


    Indices: 2137--2191  Score: 83
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       2127 CACTAAGTTA

                   *              
       2137 ACAGGACAGCTCAACGCCGTAG
          1 ACAGGACGGCTCAACGCCGTAG

                          *       
       2159 ACAGGACGGCTCAATGCCGTAG
          1 ACAGGACGGCTCAACGCCGTAG

             *         
       2181 ATAGGACGGCT
          1 ACAGGACGGCT

       2192 AAAGGCCGGA


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.29, C:0.27, G:0.31, T:0.13


Consensus pattern (22 bp):   
ACAGGACGGCTCAACGCCGTAG

Found at i:2199 original size:22 final size:22

Alignment explanation


    Indices: 2137--2199  Score: 72
    Period size: 22  Copynumber: 2.9  Consensus size: 22

       2127 CACTAAGTTA

                   *   *  *       
       2137 ACAGGACAGCTCAACGCCGTAG
          1 ACAGGACGGCTAAAGGCCGTAG

                       *  *       
       2159 ACAGGACGGCTCAATGCCGTAG
          1 ACAGGACGGCTAAAGGCCGTAG

             *                 
       2181 ATAGGACGGCTAAAGGCCG
          1 ACAGGACGGCTAAAGGCCG

       2200 GAAATATCAC


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   36  1.00

ACGTcount: A:0.30, C:0.27, G:0.32, T:0.11


Consensus pattern (22 bp):   
ACAGGACGGCTAAAGGCCGTAG
Done.