Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00637.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1824
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:419 original size:36 final size:36

Alignment explanation


    Indices: 372--444  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        362 GTATGTGTAA

                                                
        372 CATTTTTTTAAGTGGTGATAAAATTTACTTGTAGAC
          1 CATTTTTTTAAGTGGTGATAAAATTTACTTGTAGAC

                                                
        408 CATTTTTTTAAGTGGTGATAAAATTTACTTGTAGAC
          1 CATTTTTTTAAGTGGTGATAAAATTTACTTGTAGAC

             
        444 C
          1 C

        445 TCAAGTAGCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44


Consensus pattern (36 bp):   
CATTTTTTTAAGTGGTGATAAAATTTACTTGTAGAC
Done.