Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g00647.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 573
Length: 955
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Found at i:360 original size:72 final size:72
Alignment explanation
Indices: 243--392 Score: 273
Period size: 72 Copynumber: 2.1 Consensus size: 72
233 TTCAGCATCA
* *
243 GTTACTGCTTCTTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATT
1 GTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATT
308 AATATTT
66 AATATTT
315 GTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATT
1 GTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATT
380 AATATTT
66 AATATTT
*
387 GGTACT
1 GTTACT
393 ATCGAGCACC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (72 bp):
GTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATT
AATATTT
Found at i:771 original size:21 final size:21
Alignment explanation
Indices: 745--789 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
735 ACTTAGAGCA
* *
745 GAGGCAGCAGCGCGGGAGGTG
1 GAGGCAGCAGCGAGGGAGGAG
766 GAGGCAGCAGCGAGGGAGGAG
1 GAGGCAGCAGCGAGGGAGGAG
787 GAG
1 GAG
790 TAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.16, G:0.58, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGAG
Done.