Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00651.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 932

Length: 1554
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35


Found at i:1015 original size:40 final size:40

Alignment explanation


    Indices: 955--1034  Score: 151
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        945 GGGAATGTAC

                                                    
        955 AGAAGTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA
          1 AGAAGTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA

                *                                   
        995 AGAATTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA
          1 AGAAGTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA

       1035 TTAACTCTTG


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36


Consensus pattern (40 bp):   
AGAAGTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA

Found at i:1044 original size:40 final size:40

Alignment explanation


    Indices: 955--1044  Score: 144
    Period size: 40  Copynumber: 2.2  Consensus size: 40

        945 GGGAATGTAC

                *                                   
        955 AGAAGTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA
          1 AGAACTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA

                *                                   
        995 AGAATTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA
          1 AGAACTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA

            **        
       1035 TTAACTCTTG
          1 AGAACTCTTG

       1045 CTTCCATCGA


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  40   46  1.00

ACGTcount: A:0.24, C:0.11, G:0.27, T:0.38


Consensus pattern (40 bp):   
AGAACTCTTGTTGCGTCATCTTGGTGAAAGGTATGTTGAA
Done.