Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00652.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5291
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:3666 original size:34 final size:34

Alignment explanation


    Indices: 3623--3691  Score: 129
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3613 CGAAGATAAT

                                 *            
       3623 GCCAGTAGAACAGTCCATAGAGAGCTAATGGATG
          1 GCCAGTAGAACAGTCCATAGAAAGCTAATGGATG

                                              
       3657 GCCAGTAGAACAGTCCATAGAAAGCTAATGGATG
          1 GCCAGTAGAACAGTCCATAGAAAGCTAATGGATG

             
       3691 G
          1 G

       3692 TTCATCACCT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17


Consensus pattern (34 bp):   
GCCAGTAGAACAGTCCATAGAAAGCTAATGGATG
Done.