Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00672.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2247
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:38 original size:17 final size:16

Alignment explanation


    Indices: 12--45  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

          2 ACAACATAAG

                            
         12 CTTCTTTTTTCTTCTT
          1 CTTCTTTTTTCTTCTT

                            
         28 CTTCTTTTTT-TT-TT
          1 CTTCTTTTTTCTTCTT

                
         42 CTTC
          1 CTTC

         46 GAATTGTTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    6  0.33
  15    2  0.11
  16   10  0.56

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (16 bp):   
CTTCTTTTTTCTTCTT
Done.