Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00681.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 589

Length: 983
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36


Found at i:542 original size:116 final size:116

Alignment explanation


    Indices: 335--568  Score: 441
    Period size: 116  Copynumber: 2.0  Consensus size: 116

        325 AATTCTCCAA

                                                                             
        335 ATTGTTAATTTAATTTTTGAAGGGAGATGTATATTCCATAATTTCCTACAGAAATCTCTAGTCTC
          1 ATTGTTAATTTAATTTTTGAAGGGAGATGTATATTCCATAATTTCCTACAGAAATCTCTAGTCTC

                                                   *           
        400 GGCCTGTAAAAAATTATCACTAGGACCCGAATTAGCCTCTTGTAGTAGTTT
         66 GGCCTGTAAAAAATTATCACTAGGACCCGAATTAGCCTCCTGTAGTAGTTT

                                                                            *
        451 ATTGTTAATTTAATTTTTGAAGGGAGATGTATATTCCATAATTTCCTACAGAAATCTCTAGTCTT
          1 ATTGTTAATTTAATTTTTGAAGGGAGATGTATATTCCATAATTTCCTACAGAAATCTCTAGTCTC

                                 *                             
        516 GGCCTGTAAAAAATTATCACTGGGACCCGAATTAGCCTCCTGTAGTAGTTT
         66 GGCCTGTAAAAAATTATCACTAGGACCCGAATTAGCCTCCTGTAGTAGTTT

              
        567 AT
          1 AT

        569 AAGCACTCCT


Statistics
Matches: 115,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 116  115  1.00

ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Consensus pattern (116 bp):   
ATTGTTAATTTAATTTTTGAAGGGAGATGTATATTCCATAATTTCCTACAGAAATCTCTAGTCTC
GGCCTGTAAAAAATTATCACTAGGACCCGAATTAGCCTCCTGTAGTAGTTT
Done.