Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00687.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:2325 original size:26 final size:26

Alignment explanation


    Indices: 2289--2347  Score: 109
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       2279 AAATTACTGT

                                      
       2289 GAGTTTTCTTAACTAATAGGGTTAAG
          1 GAGTTTTCTTAACTAATAGGGTTAAG

                                      
       2315 GAGTTTTCTTAACTAATAGGGTTAAG
          1 GAGTTTTCTTAACTAATAGGGTTAAG

              *    
       2341 GAATTTT
          1 GAGTTTT

       2348 GGCTAAATTA


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   32  1.00

ACGTcount: A:0.31, C:0.07, G:0.22, T:0.41


Consensus pattern (26 bp):   
GAGTTTTCTTAACTAATAGGGTTAAG
Done.