Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00706.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 441

Length: 735
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38


Found at i:695 original size:26 final size:25

Alignment explanation


    Indices: 666--725  Score: 61
    Period size: 25  Copynumber: 2.4  Consensus size: 25

        656 TGATTCCTTT

                           *           
        666 TAAAAAAATTAATGATC-AAATTTAAC
          1 TAAAAAAATTAA-GAACTAAA-TTAAC

                                      
        692 TAAAGAAAA-TAAGAACTAAATTAAC
          1 TAAA-AAAATTAAGAACTAAATTAAC

            *        
        717 AAAAAAAAT
          1 TAAAAAAAT

        726 ATCCATAGCC


Statistics
Matches: 29,  Mismatches: 2, Indels: 7
        0.76            0.05        0.18

Matches are distributed among these distances:
  24    4  0.14
  25   11  0.38
  26   10  0.34
  27    4  0.14

ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23


Consensus pattern (25 bp):   
TAAAAAAATTAAGAACTAAATTAAC
Done.