Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00715.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31


Found at i:1173 original size:17 final size:18

Alignment explanation


    Indices: 1141--1175  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       1131 GGAATTTGGG

                   *          
       1141 GAGTTTTGTCTTTTTATT
          1 GAGTTTTCTCTTTTTATT

                              
       1159 GAGTTTTCT-TTTTTATT
          1 GAGTTTTCTCTTTTTATT

       1176 ATCCTATGTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69


Consensus pattern (18 bp):   
GAGTTTTCTCTTTTTATT
Done.