Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00735.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2282
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28


Found at i:1114 original size:23 final size:21

Alignment explanation


    Indices: 1065--1116  Score: 79
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1055 TTCGATGCTT

                       *         
       1065 CTGAGAGATCCGAGGAATTGC
          1 CTGAGAGATCCAAGGAATTGC

                                 
       1086 CTGAGAGATCCAAGGAATTGC
          1 CTGAGAGATCCAAGGAATTGC

                       
       1107 CT-AGGAGATC
          1 CTGA-GAGATC

       1117 AAAGAGGCCA


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  20    1  0.03
  21   28  0.97

ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19


Consensus pattern (21 bp):   
CTGAGAGATCCAAGGAATTGC
Done.