Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02179.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2458
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:922 original size:28 final size:29

Alignment explanation


    Indices: 838--923  Score: 88
    Period size: 30  Copynumber: 3.0  Consensus size: 29

        828 ATCCCTTTGC

                      *                   
        838 AATTTAT-TATAAAAATATAATA-TGTTTA
          1 AATTTATCTAAAAAAATATAATAGT-TTTA

                                *          
        866 AATTTATCTAAAAAATATATGATGAGTTTTA
          1 AATTTATCTAAAAAA-ATATAAT-AGTTTTA

            *      *                    
        897 GA-TTATTTAAAAAAATATAATAGTTTT
          1 AATTTATCTAAAAAAATATAATAGTTTT

        924 GTTCTCTCTA


Statistics
Matches: 49,  Mismatches: 5, Indels: 8
        0.79            0.08        0.13

Matches are distributed among these distances:
  28   13  0.27
  29   12  0.24
  30   17  0.35
  31    6  0.12
  32    1  0.02

ACGTcount: A:0.48, C:0.01, G:0.07, T:0.44


Consensus pattern (29 bp):   
AATTTATCTAAAAAAATATAATAGTTTTA
Done.