Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00746.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3223
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:3111 original size:24 final size:24

Alignment explanation


    Indices: 3082--3128  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3072 GTAAAAGCCG

                                    
       3082 ATAGAGTCGCACCTAAAAGGTAAT
          1 ATAGAGTCGCACCTAAAAGGTAAT

                                   
       3106 ATAGAGTCGCACCTAAAAGGTAA
          1 ATAGAGTCGCACCTAAAAGGTAA

       3129 GATAACCTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19


Consensus pattern (24 bp):   
ATAGAGTCGCACCTAAAAGGTAAT
Done.