Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00759.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1854
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31


Found at i:1165 original size:16 final size:16

Alignment explanation


    Indices: 1140--1170  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1130 TCTTGAATAT

                            
       1140 CTTGAATTATGTTTTA
          1 CTTGAATTATGTTTTA

                 *         
       1156 CTTGACTTATGTTTT
          1 CTTGAATTATGTTTT

       1171 TAGGTTTTTC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.19, C:0.10, G:0.13, T:0.58


Consensus pattern (16 bp):   
CTTGAATTATGTTTTA
Done.