Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02182.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3753
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:255 original size:15 final size:15

Alignment explanation


    Indices: 235--263  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        225 GACGCGAGCA

                           
        235 AGAAGAAGGCTGCTC
          1 AGAAGAAGGCTGCTC

                          
        250 AGAAGAAGGCTGCT
          1 AGAAGAAGGCTGCT

        264 GCCGCTGCGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14


Consensus pattern (15 bp):   
AGAAGAAGGCTGCTC

Found at i:3095 original size:26 final size:26

Alignment explanation


    Indices: 3066--3118  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3056 GTCCCTTTTA

                                      
       3066 AGCTTTTTAAACTTCTTCAAATAGAG
          1 AGCTTTTTAAACTTCTTCAAATAGAG

                                      
       3092 AGCTTTTTAAACTTCTTCAAATAGAG
          1 AGCTTTTTAAACTTCTTCAAATAGAG

             
       3118 A
          1 A

       3119 TGATGAGGGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38


Consensus pattern (26 bp):   
AGCTTTTTAAACTTCTTCAAATAGAG
Done.