Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02183.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2228
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27


Found at i:171 original size:15 final size:15

Alignment explanation


    Indices: 151--179  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        141 GACGCGAGCA

                           
        151 AGAAGAAGGCTGCTC
          1 AGAAGAAGGCTGCTC

                          
        166 AGAAGAAGGCTGCT
          1 AGAAGAAGGCTGCT

        180 GCCGCTGCGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14


Consensus pattern (15 bp):   
AGAAGAAGGCTGCTC
Done.