Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00780.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2441
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35


Found at i:2046 original size:2 final size:2

Alignment explanation


    Indices: 2039--2082  Score: 54
    Period size: 2  Copynumber: 22.5  Consensus size: 2

       2029 CATTATAGGG

                                       *  *     *                         
       2039 TA TA TA TA -A TA TA TA TA CA CA TA CA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                
       2080 TA T
          1 TA T

       2083 TTGGTGTTCT


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   36  0.97

ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43


Consensus pattern (2 bp):   
TA

Done.