Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00788.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3615
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37


Found at i:3134 original size:29 final size:29

Alignment explanation


    Indices: 3061--3119  Score: 82
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3051 TTTGACTCAA

                    * *                  
       3061 TGTATAATGTCATACATAAATTTTAATTT
          1 TGTATAATTTTATACATAAATTTTAATTT

                 *                        
       3090 TGTATGATTTTATACATAAAATTTTAATTT
          1 TGTATAATTTTATACAT-AAATTTTAATTT

       3120 GATTTAATTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  29   14  0.54
  30   12  0.46

ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51


Consensus pattern (29 bp):   
TGTATAATTTTATACATAAATTTTAATTT
Done.