Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00794.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6263
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:4148 original size:17 final size:17

Alignment explanation


    Indices: 4128--4160  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       4118 GATATCAGGA

                    *        
       4128 TAAAATTTTAATATTAT
          1 TAAAATTTAAATATTAT

                            
       4145 TAAAATTTAAATATTA
          1 TAAAATTTAAATATTA

       4161 AAAACATTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (17 bp):   
TAAAATTTAAATATTAT
Done.