Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00840.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1208
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28


Found at i:700 original size:51 final size:51

Alignment explanation


    Indices: 624--726  Score: 179
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        614 GATGCCCAAC

                                                     *         
        624 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGTTTGATACCA
          1 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA

                        *               *                      
        675 ATAAGTCCTTAATCGATAAAGTTGACGATGGATACAAGTTGCTTGATACCA
          1 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA

             
        726 A
          1 A

        727 GCATGATACC


Statistics
Matches: 49,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28


Consensus pattern (51 bp):   
ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA
Done.