Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00840.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27


Found at i:1178 original size:51 final size:51

Alignment explanation


    Indices: 1102--1204  Score: 179
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1092 GATGCCCAAC

                                                     *         
       1102 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGTTTGATACCA
          1 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA

                        *               *                      
       1153 ATAAGTCCTTAATCGATAAAGTTGACGATGGATACAAGTTGCTTGATACCA
          1 ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA

             
       1204 A
          1 A

       1205 GCATGATACC


Statistics
Matches: 49,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28


Consensus pattern (51 bp):   
ATAAGTCCTTAAACGATAAAGTTGACGAAGGATACAAGTTGCTTGATACCA
Done.