Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00866.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 858
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31


Found at i:801 original size:34 final size:34

Alignment explanation


    Indices: 758--826  Score: 138
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        748 GTCTGCTAAA

                                              
        758 TATGTTTGTAGTAATATGTTGGATTATTTTATAT
          1 TATGTTTGTAGTAATATGTTGGATTATTTTATAT

                                              
        792 TATGTTTGTAGTAATATGTTGGATTATTTTATAT
          1 TATGTTTGTAGTAATATGTTGGATTATTTTATAT

             
        826 T
          1 T

        827 GGATAAAAAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57


Consensus pattern (34 bp):   
TATGTTTGTAGTAATATGTTGGATTATTTTATAT
Done.