Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00874.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 946
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:912 original size:117 final size:117

Alignment explanation


    Indices: 706--937  Score: 401
    Period size: 117  Copynumber: 2.0  Consensus size: 117

        696 ATGTGCTTAC

                                                                 *   *       
        706 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTTTTAGTGACGTT
          1 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT

                                                *               
        771 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTATTACATATCGTATGGT
         66 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATGGT

                      *                                                      
        823 CTTGATAGGTTATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT
          1 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT

                     *   * *                                  
        888 TTGAACATGTCTTGGGTGTTTTGGATGATTTTAGTAGTACATATCGTATG
         66 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATG

        938 TTTAATGAC


Statistics
Matches: 108,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 117  108  1.00

ACGTcount: A:0.27, C:0.09, G:0.23, T:0.40


Consensus pattern (117 bp):   
CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT
TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATGGT
Done.