Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00874.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32


Found at i:720 original size:23 final size:23

Alignment explanation


    Indices: 694--746  Score: 63
    Period size: 23  Copynumber: 2.3  Consensus size: 23

        684 TAATGCAATT

                               *    
        694 CATTCTGACA-CTTCGGTGTGATC
          1 CATTCTGACATCTT-GGTGGGATC

                   *              *
        717 CATTCTGGCATCTTGGTGGGATT
          1 CATTCTGACATCTTGGTGGGATC

                   
        740 CATTCTG
          1 CATTCTG

        747 TGGAGTGTTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  23   23  0.88
  24    3  0.12

ACGTcount: A:0.15, C:0.23, G:0.25, T:0.38


Consensus pattern (23 bp):   
CATTCTGACATCTTGGTGGGATC

Found at i:1478 original size:117 final size:117

Alignment explanation


    Indices: 1272--1503  Score: 401
    Period size: 117  Copynumber: 2.0  Consensus size: 117

       1262 ATGTGCTTAC

                                                                 *   *       
       1272 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTTTTAGTGACGTT
          1 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT

                                                *               
       1337 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTATTACATATCGTATGGT
         66 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATGGT

                      *                                                      
       1389 CTTGATAGGTTATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT
          1 CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT

                     *   * *                                  
       1454 TTGAACATGTCTTGGGTGTTTTGGATGATTTTAGTAGTACATATCGTATG
         66 TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATG

       1504 TTTAATGAC


Statistics
Matches: 108,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 117  108  1.00

ACGTcount: A:0.27, C:0.09, G:0.23, T:0.40


Consensus pattern (117 bp):   
CTTGATAGGTCATATACAACATGTATCTAGGTCATTAAGAAGTATTGTGGAGTCTTAATGACGTT
TTGAACATGGCTTAGATGTTTTGGATGATTTTAGTAGTACATATCGTATGGT
Done.