Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02189.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1767
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:62 original size:3 final size:3

Alignment explanation


    Indices: 54--83  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         44 TTAGGGTTTG

                         *                         
         54 CTT CTT CTT CCT CTT CTT CTT CTT CTT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

         84 ATTTTCCTTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63


Consensus pattern (3 bp):   
CTT

Done.