Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00886.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 378

Length: 631
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32


Found at i:472 original size:27 final size:27

Alignment explanation


    Indices: 442--505  Score: 83
    Period size: 27  Copynumber: 2.4  Consensus size: 27

        432 GAGGAAGCGT

                          *            
        442 TCTGGTGGCTATACTACAAATATCTGA
          1 TCTGGTGGCTATACCACAAATATCTGA

                      * *     *       *
        469 TCTGGTGGCTCTGCCACATATATCTGT
          1 TCTGGTGGCTATACCACAAATATCTGA

                      
        496 TCTGGTGGCT
          1 TCTGGTGGCT

        506 CTGCCACGAT


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36


Consensus pattern (27 bp):   
TCTGGTGGCTATACCACAAATATCTGA

Found at i:506 original size:27 final size:26

Alignment explanation


    Indices: 462--554  Score: 123
    Period size: 27  Copynumber: 3.5  Consensus size: 26

        452 ATACTACAAA

                  *                   
        462 TATCTGATCTGGTGGCTCTGCCACAT
          1 TATCTGTTCTGGTGGCTCTGCCACAT

                                        
        488 ATATCTGTTCTGGTGGCTCTGCCACGAT
          1 -TATCTGTTCTGGTGGCTCTGCCAC-AT

                 *         *     *     
        516 TATCTATATCTGGTGACTCTGTCACAT
          1 TATCTGT-TCTGGTGGCTCTGCCACAT

                        
        543 TATCTGTTCTGG
          1 TATCTGTTCTGG

        555 CAGCCATGCT


Statistics
Matches: 59,  Mismatches: 5, Indels: 5
        0.86            0.07        0.07

Matches are distributed among these distances:
  26    5  0.08
  27   37  0.63
  28   17  0.29

ACGTcount: A:0.16, C:0.24, G:0.22, T:0.39


Consensus pattern (26 bp):   
TATCTGTTCTGGTGGCTCTGCCACAT

Done.