Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00888.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3537
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30


Found at i:208 original size:27 final size:27

Alignment explanation


    Indices: 154--209  Score: 69
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        144 GTCTGGTCGA

                                   *   
        154 GGTGGTGGTGGACGTGGCAGTGGTCGG
          1 GGTGGTGGTGGACGTGGCAGTGGCCGG

                       **               
        181 GGTGGTGGTGGTGGTGG-ACGTGGCCGG
          1 GGTGGTGGTGGACGTGGCA-GTGGCCGG

              
        208 GG
          1 GG

        210 GCAGGGCCAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  26    1  0.04
  27   24  0.96

ACGTcount: A:0.05, C:0.11, G:0.62, T:0.21


Consensus pattern (27 bp):   
GGTGGTGGTGGACGTGGCAGTGGCCGG

Found at i:369 original size:27 final size:27

Alignment explanation


    Indices: 328--450  Score: 210
    Period size: 27  Copynumber: 4.6  Consensus size: 27

        318 TAACCCCCTT

                      *                
        328 CCTCCTCAGAGGGCTCCGGCTCAGCCA
          1 CCTCCTCAGATGGCTCCGGCTCAGCCA

                                       
        355 CCTCCTCAGATGGCTCCGGCTCAGCCA
          1 CCTCCTCAGATGGCTCCGGCTCAGCCA

                                     * 
        382 CCTCCTCAGATGGCTCCGGCTCAGCAA
          1 CCTCCTCAGATGGCTCCGGCTCAGCCA

                                    *  
        409 CCTCCTCAGATGGCTCCGGCTCAGTCA
          1 CCTCCTCAGATGGCTCCGGCTCAGCCA

                    *      
        436 CCTCCTCAAATGGCT
          1 CCTCCTCAGATGGCT

        451 GTACCTCCGC


Statistics
Matches: 91,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  27   91  1.00

ACGTcount: A:0.16, C:0.42, G:0.22, T:0.20


Consensus pattern (27 bp):   
CCTCCTCAGATGGCTCCGGCTCAGCCA

Done.