Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00889.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35


Found at i:1989 original size:13 final size:12

Alignment explanation


    Indices: 1971--2003  Score: 50
    Period size: 13  Copynumber: 2.8  Consensus size: 12

       1961 TTCACGGCTG

                         
       1971 TCTTTTTTTCTTT
          1 TCTTTTTTT-TTT

                        
       1984 TCTTTTTTTTTT
          1 TCTTTTTTTTTT

                     
       1996 T-TTTTTTT
          1 TCTTTTTTT

       2004 GTTCACTGTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  11    7  0.35
  12    4  0.20
  13    9  0.45

ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91


Consensus pattern (12 bp):   
TCTTTTTTTTTT
Done.