Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00892.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3967
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32


Found at i:133 original size:3 final size:3

Alignment explanation


    Indices: 127--179  Score: 52
    Period size: 3  Copynumber: 17.7  Consensus size: 3

        117 ACGACGAGAG

                                *       * *     *   *   *                  
        127 AGA AGA AGA AGA AGA CGA AGA TGT AGA TGA TGA TGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

                  
        175 AGA AG
          1 AGA AG

        180 CGGAGGAGGA


Statistics
Matches: 42,  Mismatches: 8, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.55, C:0.02, G:0.34, T:0.09


Consensus pattern (3 bp):   
AGA

Done.