Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00898.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3800
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30


Found at i:2992 original size:15 final size:15

Alignment explanation


    Indices: 2972--3004  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       2962 TTTCTCCTCA

                    *      
       2972 GCTGGCTTTTTCTCG
          1 GCTGGCTTCTTCTCG

                           
       2987 GCTGGCTTCTTCTCG
          1 GCTGGCTTCTTCTCG

               
       3002 GCT
          1 GCT

       3005 TTGGGTGCCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.00, C:0.30, G:0.27, T:0.42


Consensus pattern (15 bp):   
GCTGGCTTCTTCTCG
Done.